IL_4U1V_108

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4U1V|1|BA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0591

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4U1V|1|BA|C|1208
4U1V|1|BA|U|1209
4U1V|1|BA|G|1210
4U1V|1|BA|C|1211
4U1V|1|BA|G|1212
4U1V|1|BA|A|1213
4U1V|1|BA|A|1214
4U1V|1|BA|G|1215
*
4U1V|1|BA|U|1234
4U1V|1|BA|G|1235
4U1V|1|BA|G|1236
4U1V|1|BA|A|1237
4U1V|1|BA|G|1238

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20