3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_110 not in the Motif Atlas
Homologous match to IL_7RQB_050
Geometric discrepancy: 0.1168
The information below is about IL_7RQB_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4U1V|1|BA|G|1310
4U1V|1|BA|G|1311
4U1V|1|BA|U|1312
4U1V|1|BA|U|1313
*
4U1V|1|BA|A|1603
4U1V|1|BA|C|1604

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain BT
50S ribosomal protein L23

Coloring options:


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