IL_50694.2

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_4QLM_004	4QLM	0.1976	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	91	G	92	U	93	C	94	*	G	39	G	40	cWW			tSH	cWW
2	IL_4QK9_003	4QK9	0.2518	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
3	IL_4W90_004	4W90	0.2599	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW
4	IL_6CZR_139	6CZR	0.2081	Major groove platform; stack outside cWW	1a	SSU rRNA	U	735	G	736	A	737	C	738	*	G	638	A	639	cWW				cWW
5	IL_4LFB_027	4LFB	0.1523	Major groove platform; stack outside cWW	A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
6	IL_5J7L_031	5J7L	0.1572	Major groove platform; stack outside cWW	AA	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
7	IL_1KUQ_001	1KUQ	0.1978	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	U	50	G	51	A	52	C	53	*	G	18	A	19	cWW		ncSH	tSH	cWW
8	IL_1G1X_001	1G1X	0.1447	Major groove platform; stack outside cWW	E+D	16S RIBOSOMAL RNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
9	IL_1G1X_004	1G1X	0.1732	Major groove platform; stack outside cWW	J+I	16S RIBOSOMAL RNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW		ncSH	tSH	cWW
10	IL_7RQB_066	7RQB	0.0000	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
11	IL_5J7L_306	5J7L	0.0573	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
12	IL_4WF9_064	4WF9	0.0937	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
13	IL_4V9F_061	4V9F	0.0924	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
14	IL_8C3A_082	8C3A	0.0948	Major groove platform; stack outside cWW	1	LSU rRNA	G	1894	G	1895	A	1896	A	1897	*	U	2314	C	2315	cWW			tSH	cWW
15	IL_5TBW_076	5TBW	0.0965	Major groove platform; stack outside cWW	1	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
16	IL_7A0S_061	7A0S	0.1010	Major groove platform; stack outside cWW	X	LSU rRNA	G	1683	G	1684	A	1685	A	1686	*	U	1976	C	1977	cWW			tSH	cWW
17	IL_4V9F_008	4V9F	0.1821	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
18	IL_4WF9_049	4WF9	0.2243	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
19	IL_7RQB_050	7RQB	0.2023	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
20	IL_5J7L_290	5J7L	0.2528	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW				cWW
21	IL_4V9F_050	4V9F	0.2978	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
22	IL_7A0S_046	7A0S	0.3237	Major groove platform; stack outside cWW	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW
23	IL_4V88_428	4V88	0.2672	Major groove platform; stack outside cWW	A6	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW				cWW
24	IL_6N5P_003	6N5P	0.2558	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	94	G	95	A	96	C	97	*	G	44	G	45	cWW			tSH	cWW
25	IL_3D0U_004	3D0U	0.5626	Major groove platform; stack outside cWW	A	Lysine Riboswitch RNA	C	35	A	36	U	37	C	38	*	G	51	G	52	cWW		cSH		cWW
26	IL_3DIL_004	3DIL	0.6167	Major groove platform; stack outside cWW	A	RNA (174-MER)	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
27	IL_1NTA_003	1NTA	0.4778	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAA*UC	7
UGAC*GA	6
GGUU*AC	4
CGUC*GG	3
CAUC*GG	2
CGAA*UG	1
GUUU*AC	1
CAUU*AG	1
CGAC*GG	1
CUUC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*	15
GU*	7
AU*	3
UU*	2

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_50694.2 Version IL_50694.2 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_50694.2 Version IL_50694.2 of this group appears in releases 3.80 to 3.86

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Csv

Json