3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAG*UGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_123 not in the Motif Atlas
Homologous match to IL_5J7L_303
Geometric discrepancy: 0.0766
The information below is about IL_5J7L_303
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

4U1V|1|BA|C|1526
4U1V|1|BA|G|1527
4U1V|1|BA|A|1528
4U1V|1|BA|G|1529
*
4U1V|1|BA|U|1542
4U1V|1|BA|G|1543
4U1V|1|BA|A|1544
4U1V|1|BA|A|1545
4U1V|1|BA|G|1546

Current chains

Chain BA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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