IL_4U1V_127

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4U1V|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_127 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0701

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4U1V|1|BA|A|1669
4U1V|1|BA|C|1670
4U1V|1|BA|U|1671
4U1V|1|BA|A|1672
4U1V|1|BA|G|1673
4U1V|1|BA|G|1674
*
4U1V|1|BA|C|1990
4U1V|1|BA|U|1991
4U1V|1|BA|G|1992
4U1V|1|BA|U|1993

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14