3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
4U1V|1|BA|A|2542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_160 not in the Motif Atlas
Homologous match to IL_5J7L_342
Geometric discrepancy: 0.0609
The information below is about IL_5J7L_342
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

4U1V|1|BA|U|2522
4U1V|1|BA|G|2523
*
4U1V|1|BA|C|2540
4U1V|1|BA|A|2541
4U1V|1|BA|A|2542
4U1V|1|BA|G|2543

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B4
50S ribosomal protein L36
Chain BJ
50S ribosomal protein L13

Coloring options:


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