#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_8CRE_1208CRE0.35011Major groove platform with intercalation (H)1 LSU rRNAU2881A2882G2884*U2863A2864cWWntSHcWW
2 IL_8P9A_3398P9A0.34411Major groove platform with intercalation (H)AR LSU rRNAU2909A2910G2912*U2891A2892cWWtSHcWW
3 IL_4V9F_0894V9F0.15751Major groove platform with intercalation0 LSU rRNAC2575A2576G2578*U2557G2558cWWntSHcWW
4 IL_9DFE_0999DFE0.122111A LSU rRNAC2540A2541G2543*U2522G2523cWWntSHcWW
5 IL_4WF9_0974WF90.08711Major groove platform with intercalationX LSU rRNAC2567A2568G2570*U2549G2550cWWntSHcWW
6 IL_5J7L_3425J7L0.00001Major groove platform with intercalationDA LSU rRNAC2540A2541G2543*U2522G2523cWWntSHcWW
7 IL_7A0S_0917A0S0.11061Major groove platform with intercalationX LSU rRNAC2519A2520G2522*U2501G2502cWWcWW
8 IL_4KQY_0044KQY0.38231Minor groove platformA SAM-I riboswitchC73A74G76*C49G50cWWncSHcWW
9 IL_8DP3_0018DP30.58431Major groove platformRRNA (90-MER)C48U49G51*C78G79cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAG*UG5
UAAG*UA2
CAAG*CG1
CUAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*8
UA*1

Release history

Release3.953.96
Date2025-03-262025-04-23
StatusNew id, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with intercalation (4)
  • Major groove platform with intercalation (H) (2)
  • Minor groove platform (1)
  • Major groove platform (1)
  • (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.08 | Avg 0.31 | Max 0.65
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