3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_267 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.1042
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4U1V|1|DA|G|856
4U1V|1|DA|G|857
4U1V|1|DA|G|858
4U1V|1|DA|G|859
4U1V|1|DA|U|860
4U1V|1|DA|A|861
4U1V|1|DA|G|862
*
4U1V|1|DA|C|915
4U1V|1|DA|G|916
4U1V|1|DA|A|917
4U1V|1|DA|A|918
4U1V|1|DA|U|919
4U1V|1|DA|A|920
4U1V|1|DA|C|921

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DM
50S ribosomal protein L16
Chain DW
50S ribosomal protein L27
Chain DZ
50S ribosomal protein L30

Coloring options:


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