IL_4U1V_287

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_287 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0833

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4U1V|1|DA|C|1319
4U1V|1|DA|C|1320
4U1V|1|DA|A|1321
4U1V|1|DA|A|1322
4U1V|1|DA|C|1323
*
4U1V|1|DA|G|1331
4U1V|1|DA|G|1332
4U1V|1|DA|G|1333

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DT

50S ribosomal protein L23