Motif IL_63596.11 Version IL_63596.11 of this group appears in releases 3.95 to 3.96

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7	1-3	1-7	2-4	2-6	3-7	4-7	5-6
1	IL_6XJQ_001	6XJQ	0.1634	1	C-loop	A	Self-alkylating ribozyme (58-MER)	G	5	C	6	U	7	C	8	C	9	*	G	52	C	54	ncSH	cWW	cSH	tWH		ncWS	cWW
2	IL_5J7L_347	5J7L	0.0000	1	C-loop	DA	LSU rRNA	U	2680	C	2681	A	2682	C	2683	U	2684	*	A	2725	A	2727	ncSH	cWW	cSH	tWH		cWS	cWW
3	IL_7A0S_095	7A0S	0.1091	1	C-loop	X	LSU rRNA	C	2659	C	2660	G	2661	C	2662	U	2663	*	A	2705	G	2707		cWW	ncSH	tWH		cWS	cWW
4	IL_4WF9_101	4WF9	0.1132	1	C-loop	X	LSU rRNA	C	2707	C	2708	U	2709	C	2710	U	2711	*	A	2752	G	2754		cWW	ncSH	tWH	ntHS	cWS	cWW
5	IL_9DFE_103	9DFE	0.1191	1	C-loop	1A	LSU rRNA	C	2680	C	2681	U	2682	C	2683	U	2684	*	A	2725	G	2727		cWW	cSH	tWH	tHS	cWS	cWW
6	IL_8HNT_002	8HNT	0.1386	1	C-loop	B	sgRNA	G	87	C	88	U	89	C	90	U	91	*	A	120	C	122	ncSH	cWW	ncSH	tWH		cWS	cWW
7	IL_4V9F_051	4V9F	0.1860	1	C-loop	0	LSU rRNA	G	1425	C	1426	A	1427	C	1428	U	1429	*	A	1437	C	1439		cWW	cSH	tWH		cWS	cWW
8	IL_4V9F_093	4V9F	0.1749	1	C-loop	0	LSU rRNA	C	2717	C	2718	A	2719	C	2720	U	2721	*	A	2761	G	2763		cWW	cSH	tWH		cWS	cWW
9	IL_4JRC_003	4JRC	0.1919	1	C-loop	B	Distal Stem I region of the glyQS T box leader RNA	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW	cSH	tWH	tHS	cWS	cWW
10	IL_5B2P_003	5B2P	0.1895	1	C-loop	B	Guide RNA	C	76	C	77	U	78	C	79	U	80	*	A	88	G	90		cWW	cSH	tWH	tHS	cWS	cWW
11	IL_6JDV_004	6JDV	0.2168	1	C-loop	B	sgRNA	G	105	C	106	U	107	C	108	U	109	*	A	138	C	140	ncSH	cWW		tWH		cWS	cWW
12	IL_8P9A_431	8P9A	0.1787	2	C-loop	sR	SSU rRNA	U	1617	C	1618	C	1619	C	1620	U	1621	*	A	1157	A	1160		cWW		tWH		cWS	cWW
13	IL_8CRE_445	8CRE	0.1913	2	C-loop (H)	CM	SSU rRNA	U	1604	C	1605	C	1606	C	1607	U	1608	*	A	1142	A	1145	cSH	cWW	ncSH	tWH		cWS	cWW
14	IL_1KOG_007	1KOG	0.1286	1	C-loop	O	Threonyl-tRNA synthetase mRNA	C	96	C	97	A	98	C	99	U	100	*	A	74	G	76	ncSH	cWW	cSH	tWH		cWS	cWW
15	IL_4MGN_001	4MGN	0.1769	1	C-loop	A	glyQS T box riboswitch	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW	ncSH	ntWH	ntHS	cWS	cWW
16	IL_5J7L_291	5J7L	0.2565	1	C-loop	DA	LSU rRNA	C	1319	C	1320	A	1321	A	1322	C	1323	*	G	1331	G	1333		cWW	ncSH	tWH		cWS	cWW
17	IL_9DFE_050	9DFE	0.2583	1	C-loop	1A	LSU rRNA	G	1319	C	1320	A	1321	A	1322	U	1323	*	A	1331	C	1333		cWW		tWH		cWS	cWW
18	IL_8P9A_290	8P9A	0.3153	1	C-loop	AR	LSU rRNA	U	1501	C	1502	A	1503	A	1504	C	1505	*	G	1513	A	1515		ncWW		tWH		cWS	cWW
19	IL_8CRE_066	8CRE	0.3275	1	C-loop (H)	1	LSU rRNA	U	1497	C	1498	A	1499	A	1500	C	1501	*	G	1509	A	1511		ncWW		tWH		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCUCU*ACG	3
CCUCU*AUG	2
GCUCU*AUC	2
UCCCU*ACCA	2
UCAAC*GGA	2
GCUCC*GUC	1
UCACU*AAA	1
CCGCU*AUG	1
GCACU*AGC	1
CCACU*ACG	1
CCACU*AUG	1
CCAAC*GGG	1
GCAAU*AGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUC*U	5
CAA*G	4
CUC*C	3
CCC*CC	2
CAC*A	1
CGC*U	1
CAC*G	1
CAC*C	1
CAC*U	1

Release history

Release	3.95	3.96
Date	2025-03-26	2025-04-23
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-loop (17)
C-loop (H) (2)
Basepair signature: cWW-cWS-cSH-tWH-cWW-L
Heat map statistics: Min 0.11 | Avg 0.24 | Max 0.60

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Coloring options: Nucleotide numbers

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