IL_4U1V_345

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

4U1V|1|DA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_345 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0929

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4U1V|1|DA|G|2737
4U1V|1|DA|A|2738
4U1V|1|DA|U|2739
4U1V|1|DA|A|2740
4U1V|1|DA|A|2741
4U1V|1|DA|G|2742
*
4U1V|1|DA|C|2762
4U1V|1|DA|G|2763
4U1V|1|DA|A|2764
4U1V|1|DA|A|2765
4U1V|1|DA|A|2766
4U1V|1|DA|C|2767

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DJ

50S ribosomal protein L13