3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_350 not in the Motif Atlas
Homologous match to IL_7RQB_110
Geometric discrepancy: 0.0963
The information below is about IL_7RQB_110
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_83162.5
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

4U1V|1|DA|U|2847
4U1V|1|DA|G|2848
4U1V|1|DA|U|2849
4U1V|1|DA|A|2850
4U1V|1|DA|A|2851
4U1V|1|DA|G|2852
*
4U1V|1|DA|U|2865
4U1V|1|DA|U|2866
4U1V|1|DA|G|2867
4U1V|1|DA|A|2868
4U1V|1|DA|G|2869

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DN
50S ribosomal protein L17
Chain DP
50S ribosomal protein L19

Coloring options:


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