IL_4U1V_365

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_365 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2298

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4U1V|1|BA|U|1474
4U1V|1|BA|G|1475
4U1V|1|BA|U|1476
4U1V|1|BA|A|1477
4U1V|1|BA|G|1478
*
4U1V|1|BA|U|1513
4U1V|1|BA|G|1514
4U1V|1|BA|A|1515
4U1V|1|BA|G|1516
4U1V|1|BA|G|1517

Current chains

Chain BA

23S rRNA

Nearby chains