IL_4U1V_366

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_366 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0555

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4U1V|1|BA|G|1666
4U1V|1|BA|G|1667
4U1V|1|BA|A|1668
4U1V|1|BA|A|1669
4U1V|1|BA|C|1670
4U1V|1|BA|U|1671
4U1V|1|BA|A|1672
4U1V|1|BA|G|1673
4U1V|1|BA|G|1674
*
4U1V|1|BA|C|1990
4U1V|1|BA|U|1991
4U1V|1|BA|G|1992
4U1V|1|BA|U|1993
4U1V|1|BA|C|1994

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14