IL_4U20_329

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4U20|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U20_329 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4042

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4U20|1|DA|G|2124
4U20|1|DA|G|2125
4U20|1|DA|A|2126
4U20|1|DA|G|2127
4U20|1|DA|G|2128
*
4U20|1|DA|C|2160
4U20|1|DA|C|2161
4U20|1|DA|G|2162
4U20|1|DA|A|2163
4U20|1|DA|C|2164
4U20|1|DA|C|2165
4U20|1|DA|U|2166
4U20|1|DA|U|2167
4U20|1|DA|G|2168
4U20|1|DA|A|2169
4U20|1|DA|A|2170
4U20|1|DA|A|2171
4U20|1|DA|U|2172
4U20|1|DA|A|2173
4U20|1|DA|C|2174

Current chains

Chain DA

23S rRNA

Nearby chains