IL_4U20_381

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U20_381 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2643

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4U20|1|DA|C|1526
4U20|1|DA|G|1527
4U20|1|DA|A|1528
4U20|1|DA|G|1529
4U20|1|DA|G|1530
*
4U20|1|DA|C|1541
4U20|1|DA|U|1542
4U20|1|DA|G|1543
4U20|1|DA|A|1544
4U20|1|DA|A|1545
4U20|1|DA|G|1546

Current chains

Chain DA

23S rRNA

Nearby chains