IL_4U24_217

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4U24|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_217 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3195

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4U24|1|CA|C|1051
4U24|1|CA|U|1052
4U24|1|CA|G|1053
4U24|1|CA|C|1054
4U24|1|CA|A|1055
4U24|1|CA|U|1056
*
4U24|1|CA|A|1204
4U24|1|CA|U|1205
4U24|1|CA|G|1206
4U24|1|CA|G|1207

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14