IL_4U24_279
3D structure
- PDB id
- 4U24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to dalfopristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U24_279 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.277
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4U24|1|DA|A|1262
4U24|1|DA|U|1263
4U24|1|DA|A|1264
4U24|1|DA|A|1265
4U24|1|DA|G|1266
4U24|1|DA|U|1267
4U24|1|DA|A|1268
4U24|1|DA|A|1269
4U24|1|DA|C|1270
*
4U24|1|DA|G|2010
4U24|1|DA|U|2011
4U24|1|DA|G|2012
4U24|1|DA|A|2013
4U24|1|DA|A|2014
4U24|1|DA|A|2015
4U24|1|DA|U|2016
4U24|1|DA|U|2017
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L4
- Chain DN
- 50S ribosomal protein L17
- Chain DS
- 50S ribosomal protein L22
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