3D structure

PDB id
4U24 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to dalfopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
4U24|1|DA|C|1838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U24_303 not in the Motif Atlas
Homologous match to IL_5J7L_314
Geometric discrepancy: 0.1325
The information below is about IL_5J7L_314
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

4U24|1|DA|C|1837
4U24|1|DA|C|1838
4U24|1|DA|G|1839
4U24|1|DA|G|1840
*
4U24|1|DA|C|1902
4U24|1|DA|G|1903

Current chains

Chain DA
23S rRNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DC
50S ribosomal protein L2

Coloring options:


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