IL_4U24_374
3D structure
- PDB id
- 4U24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to dalfopristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCAAG*CAACCC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U24_374 not in the Motif Atlas
- Geometric match to IL_6DVK_004
- Geometric discrepancy: 0.3648
- The information below is about IL_6DVK_004
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U24|1|DA|G|874
4U24|1|DA|G|875
4U24|1|DA|C|876
4U24|1|DA|A|877
4U24|1|DA|A|878
4U24|1|DA|G|879
*
4U24|1|DA|C|898
4U24|1|DA|A|899
4U24|1|DA|A|900
4U24|1|DA|C|901
4U24|1|DA|C|902
4U24|1|DA|C|903
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DM
- 50S ribosomal protein L16
Coloring options: