IL_4U24_379

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U24_379 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.11

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U24|1|DA|U|1851
4U24|1|DA|U|1852
4U24|1|DA|A|1853
4U24|1|DA|A|1854
4U24|1|DA|U|1855
4U24|1|DA|U|1856
4U24|1|DA|G|1857
4U24|1|DA|A|1858
4U24|1|DA|U|1859
4U24|1|DA|G|1860
*
4U24|1|DA|U|1882
4U24|1|DA|U|1883
4U24|1|DA|G|1884
4U24|1|DA|A|1885
4U24|1|DA|U|1886
4U24|1|DA|C|1887
4U24|1|DA|G|1888
4U24|1|DA|A|1889
4U24|1|DA|A|1890
4U24|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains