IL_4U25_012

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4U25|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0939

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4U25|1|AA|G|147
4U25|1|AA|G|148
4U25|1|AA|A|149
4U25|1|AA|U|150
4U25|1|AA|A|151
4U25|1|AA|A|152
4U25|1|AA|C|153
*
4U25|1|AA|G|168
4U25|1|AA|C|169
4U25|1|AA|U|170
4U25|1|AA|A|171
4U25|1|AA|A|172
4U25|1|AA|U|173
4U25|1|AA|A|174
4U25|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20