IL_4U25_053
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 4U25|1|AA|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_053 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.0873
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|AA|U|1247
4U25|1|AA|A|1248
4U25|1|AA|C|1249
4U25|1|AA|A|1250
4U25|1|AA|A|1251
4U25|1|AA|A|1252
4U25|1|AA|G|1253
*
4U25|1|AA|C|1284
4U25|1|AA|A|1285
4U25|1|AA|U|1286
4U25|1|AA|A|1287
4U25|1|AA|A|1288
4U25|1|AA|A|1289
4U25|1|AA|G|1290
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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