IL_4U25_081

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4U25|1|BA|G|801, 4U25|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_081 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0555

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4U25|1|BA|G|674
4U25|1|BA|A|675
4U25|1|BA|A|676
4U25|1|BA|A|677
4U25|1|BA|C|678
*
4U25|1|BA|G|799
4U25|1|BA|A|800
4U25|1|BA|G|801
4U25|1|BA|A|802
4U25|1|BA|U|803
4U25|1|BA|A|804
4U25|1|BA|G|805
4U25|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15