IL_4U25_088

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

4U25|1|BA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_088 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.0802

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4U25|1|BA|U|847
4U25|1|BA|C|848
*
4U25|1|BA|G|930
4U25|1|BA|U|931
4U25|1|BA|U|932
4U25|1|BA|A|933

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BZ

50S ribosomal protein L30