Motif IL_56987.1 Version IL_56987.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6XJQ_007 | 6XJQ | 0.3782 | 1 | A | Self-alkylating ribozyme (58-MER) | C | 23 | U | 25 | G | 26 | * | C | 35 | G | 36 | cWW | cWW | |
| 2 | IL_5J7L_268 | 5J7L | 0.0000 | 1 | Stack outside cWW | DA | LSU rRNA | G | 930 | U | 932 | A | 933 | * | U | 847||A | C | 848 | cWW | cWW |
| 3 | IL_5DO4_003 | 5DO4 | 0.7826 | 1 | A | RNA (25-MER) | G | 16 | ADS | 18 | CFZ | 19 | * | G | 10 | CFZ | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG*CG | 1 |
| UC*GUUA | 1 |
| G(UFT)(ADS)(CFZ)*G(CFZ) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU* | 1 |
| *UU | 1 |
| (UFT)(ADS)* | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Stack outside cWW (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.38 | Avg 0.47 | Max 0.94
Coloring options: