IL_4U25_104
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 4U25|1|BA|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_104 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.06
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4U25|1|BA|C|1043
4U25|1|BA|C|1044
4U25|1|BA|C|1045
4U25|1|BA|A|1046
4U25|1|BA|G|1047
4U25|1|BA|A|1048
4U25|1|BA|C|1049
4U25|1|BA|A|1050
4U25|1|BA|G|1051
*
4U25|1|BA|U|1108
4U25|1|BA|C|1109
4U25|1|BA|G|1110
4U25|1|BA|A|1111
4U25|1|BA|G|1112
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B4
- 50S ribosomal protein L36
- Chain BG
- 50S ribosomal protein L6
Coloring options: