IL_4U25_105

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4U25|1|BA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_105 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.4854

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4U25|1|BA|G|1059
4U25|1|BA|U|1060
4U25|1|BA|U|1061
4U25|1|BA|G|1062
*
4U25|1|BA|C|1076
4U25|1|BA|A|1077
4U25|1|BA|U|1078
4U25|1|BA|C|1079

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

50S ribosomal protein L11