3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_160 not in the Motif Atlas
Geometric match to IL_5J7L_346
Geometric discrepancy: 0.0703
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4U25|1|BA|C|2652
4U25|1|BA|U|2653
4U25|1|BA|A|2654
4U25|1|BA|G|2655
4U25|1|BA|U|2656
4U25|1|BA|A|2657
4U25|1|BA|C|2658
*
4U25|1|BA|G|2663
4U25|1|BA|G|2664
4U25|1|BA|A|2665
4U25|1|BA|C|2666
4U25|1|BA|C|2667
4U25|1|BA|G|2668

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BG
50S ribosomal protein L6

Coloring options:


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