IL_4U25_174

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_174 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0493

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4U25|1|BB|C|71
4U25|1|BB|G|72
4U25|1|BB|A|73
4U25|1|BB|U|74
4U25|1|BB|G|75
4U25|1|BB|G|76
4U25|1|BB|U|77
4U25|1|BB|A|78
4U25|1|BB|G|79
*
4U25|1|BB|C|97
4U25|1|BB|G|98
4U25|1|BB|A|99
4U25|1|BB|G|100
4U25|1|BB|A|101
4U25|1|BB|G|102
4U25|1|BB|U|103
4U25|1|BB|A|104
4U25|1|BB|G|105

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25