IL_4U25_180

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGG*CGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_180 not in the Motif Atlas

Homologous match to IL_5J7L_006

Geometric discrepancy: 0.1095

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4U25|1|CA|C|67
4U25|1|CA|G|68
4U25|1|CA|G|69
*
4U25|1|CA|C|99
4U25|1|CA|G|100
4U25|1|CA|A|101
4U25|1|CA|G|102

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20