IL_4U25_188

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4U25|1|CA|U|244, 4U25|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_188 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0847

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4U25|1|CA|G|242
4U25|1|CA|A|243
4U25|1|CA|U|244
4U25|1|CA|U|245
4U25|1|CA|A|246
4U25|1|CA|G|247
*
4U25|1|CA|C|277
4U25|1|CA|G|278
4U25|1|CA|A|279
4U25|1|CA|C|280
4U25|1|CA|G|281
4U25|1|CA|A|282
4U25|1|CA|U|283
4U25|1|CA|C|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17