IL_4U25_195

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_195 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.0901

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4U25|1|CA|C|440
4U25|1|CA|A|441
4U25|1|CA|G|442
*
4U25|1|CA|C|492
4U25|1|CA|A|493
4U25|1|CA|G|494
4U25|1|CA|A|495
4U25|1|CA|A|496
4U25|1|CA|G|497

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4