IL_4U25_197

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_197 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4U25|1|CA|G|450
4U25|1|CA|A|451
4U25|1|CA|A|452
4U25|1|CA|G|453
4U25|1|CA|G|454
4U25|1|CA|G|455
*
4U25|1|CA|C|477
4U25|1|CA|A|478
4U25|1|CA|U|479
4U25|1|CA|U|480
4U25|1|CA|G|481
4U25|1|CA|A|482
4U25|1|CA|C|483

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CP

30S ribosomal protein S16