IL_4U25_216

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_216 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.2498

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4U25|1|CA|G|993
4U25|1|CA|A|994
4U25|1|CA|C|995
4U25|1|CA|A|996
4U25|1|CA|U|997
*
4U25|1|CA|A|1044
4U25|1|CA|C|1045

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14