3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_245 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0993
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

4U25|1|DA|C|239
4U25|1|DA|C|240
4U25|1|DA|A|241
4U25|1|DA|G|242
4U25|1|DA|U|243
4U25|1|DA|A|244
4U25|1|DA|G|245
*
4U25|1|DA|C|253
4U25|1|DA|G|254
4U25|1|DA|A|255
4U25|1|DA|A|256
4U25|1|DA|C|257
4U25|1|DA|G|258

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D3
50S ribosomal protein L35
Chain DL
50S ribosomal protein L15

Coloring options:


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