IL_4U25_245

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_245 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0993

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4U25|1|DA|C|239
4U25|1|DA|C|240
4U25|1|DA|A|241
4U25|1|DA|G|242
4U25|1|DA|U|243
4U25|1|DA|A|244
4U25|1|DA|G|245
*
4U25|1|DA|C|253
4U25|1|DA|G|254
4U25|1|DA|A|255
4U25|1|DA|A|256
4U25|1|DA|C|257
4U25|1|DA|G|258

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15