IL_4U25_248

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_248 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1304

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4U25|1|DA|U|293
4U25|1|DA|A|294
4U25|1|DA|G|295
*
4U25|1|DA|C|343
4U25|1|DA|A|344
4U25|1|DA|A|345
4U25|1|DA|A|346
4U25|1|DA|A|347

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24