IL_4U25_289

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4U25|1|DA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_289 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4U25|1|DA|G|1432
4U25|1|DA|A|1433
4U25|1|DA|A|1434
4U25|1|DA|G|1435
*
4U25|1|DA|C|1557
4U25|1|DA|C|1558
4U25|1|DA|U|1559
4U25|1|DA|G|1560
4U25|1|DA|C|1561

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2