IL_4U25_290

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

4U25|1|DA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_290 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1306

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4U25|1|DA|C|1437
4U25|1|DA|U|1438
4U25|1|DA|A|1439
4U25|1|DA|U|1440
*
4U25|1|DA|A|1551
4U25|1|DA|A|1552
4U25|1|DA|A|1553
4U25|1|DA|U|1554
4U25|1|DA|G|1555

Current chains

Chain DA

23S rRNA

Nearby chains