IL_4U25_296

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_296 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1484

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4U25|1|DA|C|1526
4U25|1|DA|G|1527
4U25|1|DA|A|1528
4U25|1|DA|G|1529
*
4U25|1|DA|U|1542
4U25|1|DA|G|1543
4U25|1|DA|A|1544
4U25|1|DA|A|1545
4U25|1|DA|G|1546

Current chains

Chain DA

23S rRNA

Nearby chains