IL_4U25_311

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4U25|1|DA|A|1938, 4U25|1|DA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_311 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1395

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4U25|1|DA|C|1934
4U25|1|DA|G|1935
4U25|1|DA|A|1936
4U25|1|DA|A|1937
4U25|1|DA|A|1938
4U25|1|DA|U|1939
4U25|1|DA|U|1940
4U25|1|DA|C|1941
4U25|1|DA|C|1942
4U25|1|DA|U|1943
4U25|1|DA|U|1944
4U25|1|DA|G|1945
*
4U25|1|DA|C|1961
4U25|1|DA|C|1962
4U25|1|DA|U|1963
4U25|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2