IL_4U25_320

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_320 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4934

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4U25|1|DA|G|2110
4U25|1|DA|U|2111
4U25|1|DA|G|2112
4U25|1|DA|U|2113
4U25|1|DA|A|2114
4U25|1|DA|G|2115
4U25|1|DA|G|2116
4U25|1|DA|A|2117
4U25|1|DA|U|2118
4U25|1|DA|A|2119
4U25|1|DA|G|2120
*
4U25|1|DA|C|2178
4U25|1|DA|C|2179

Current chains

Chain DA

23S rRNA

Nearby chains