IL_4U25_371

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_371 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.3041

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4U25|1|CA|U|952
4U25|1|CA|G|953
4U25|1|CA|G|954
*
4U25|1|CA|C|1226
4U25|1|CA|A|1227
4U25|1|CA|C|1228
4U25|1|CA|A|1229

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19