3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGAGG*CUGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_384 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.2965
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4U25|1|DA|C|1526
4U25|1|DA|G|1527
4U25|1|DA|A|1528
4U25|1|DA|G|1529
4U25|1|DA|G|1530
*
4U25|1|DA|C|1541
4U25|1|DA|U|1542
4U25|1|DA|G|1543
4U25|1|DA|A|1544
4U25|1|DA|A|1545
4U25|1|DA|G|1546

Current chains

Chain DA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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