IL_4U25_384

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_384 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2965

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4U25|1|DA|C|1526
4U25|1|DA|G|1527
4U25|1|DA|A|1528
4U25|1|DA|G|1529
4U25|1|DA|G|1530
*
4U25|1|DA|C|1541
4U25|1|DA|U|1542
4U25|1|DA|G|1543
4U25|1|DA|A|1544
4U25|1|DA|A|1545
4U25|1|DA|G|1546

Current chains

Chain DA

23S rRNA

Nearby chains