3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_385 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0775
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4U25|1|DA|G|1666
4U25|1|DA|G|1667
4U25|1|DA|A|1668
4U25|1|DA|A|1669
4U25|1|DA|C|1670
4U25|1|DA|U|1671
4U25|1|DA|A|1672
4U25|1|DA|G|1673
4U25|1|DA|G|1674
*
4U25|1|DA|C|1990
4U25|1|DA|U|1991
4U25|1|DA|G|1992
4U25|1|DA|U|1993
4U25|1|DA|C|1994

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain DK
50S ribosomal protein L14

Coloring options:


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