IL_4U25_386

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_386 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0798

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U25|1|DA|U|1851
4U25|1|DA|U|1852
4U25|1|DA|A|1853
4U25|1|DA|A|1854
4U25|1|DA|U|1855
4U25|1|DA|U|1856
4U25|1|DA|G|1857
4U25|1|DA|A|1858
4U25|1|DA|U|1859
4U25|1|DA|G|1860
*
4U25|1|DA|U|1882
4U25|1|DA|U|1883
4U25|1|DA|G|1884
4U25|1|DA|A|1885
4U25|1|DA|U|1886
4U25|1|DA|C|1887
4U25|1|DA|G|1888
4U25|1|DA|A|1889
4U25|1|DA|A|1890
4U25|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains