IL_4U26_257

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U26_257 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1211

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4U26|1|DA|U|703
4U26|1|DA|G|704
4U26|1|DA|A|705
4U26|1|DA|A|706
4U26|1|DA|G|707
*
4U26|1|DA|U|724
4U26|1|DA|G|725
4U26|1|DA|G|726
4U26|1|DA|A|727
4U26|1|DA|G|728

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2