IL_4U26_364

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

4U26|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U26_364 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3904

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4U26|1|CA|U|662
4U26|1|CA|A|663
4U26|1|CA|G|664
4U26|1|CA|A|665
4U26|1|CA|G|666
4U26|1|CA|G|667
*
4U26|1|CA|C|739
4U26|1|CA|U|740
4U26|1|CA|G|741
4U26|1|CA|G|742
4U26|1|CA|A|743

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18