IL_4U27_030

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGU*AUACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_030 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3666

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4U27|1|AA|A|596
4U27|1|AA|G|597
4U27|1|AA|U|598
*
4U27|1|AA|A|640
4U27|1|AA|U|641
4U27|1|AA|A|642
4U27|1|AA|C|643
4U27|1|AA|U|644

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AQ

30S ribosomal protein S17