IL_4U27_190

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4U27|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_190 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1069

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4U27|1|CA|G|147
4U27|1|CA|G|148
4U27|1|CA|A|149
4U27|1|CA|U|150
4U27|1|CA|A|151
4U27|1|CA|A|152
4U27|1|CA|C|153
*
4U27|1|CA|G|168
4U27|1|CA|C|169
4U27|1|CA|U|170
4U27|1|CA|A|171
4U27|1|CA|A|172
4U27|1|CA|U|173
4U27|1|CA|A|174
4U27|1|CA|C|175

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20